PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054300.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 345aa    MW: 38571.9 Da    PI: 6.2623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054300.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011263285123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C +Cgk F  + + ++H +++
  EcC054300.40 263 FMCRKCGKAFAVRGDWRTHEKNC 285
                   89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-6244283No hitNo description
Gene3DG3DSA:3.30.160.609.4E-6259283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030001Biological Processmetal ion transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0019867Cellular Componentouter membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043531Molecular FunctionADP binding
GO:0046873Molecular Functionmetal ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTDPYSSYLN GWINFNPLHH CSPSPPPPSS SFSSIATNNY YNSSHCFYSL YDYNHVYSAA  60
SLPHASPPPS PPLKEALPLL SCLSPARHEE EEQASLSTPM EVENPSCQKD SFFPRNSADV  120
ADEDDDGDGD GEAVTVALHL GLPSPSSVDL ISRLSSTEIS SDKELDQETT VASSGYFTSN  180
NKLNKGQYWI PTPAQILIGP TQFSCPLCFK TFNRYNNMQM LRLPCYCCAP GCKNNIDHPR  240
SKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CSCGSDFKHK  300
RSLKDHIRAF GSGHTAYGIE DDCGFEEEEA ATSEIEQDNN FECSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031820.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-108ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A059ABH90.0A0A059ABH9_EUCGR; Uncharacterized protein
STRINGXP_010031820.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-98C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]