PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054060.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 478aa    MW: 52340.7 Da    PI: 9.0037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054060.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-056181323
                  ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                  C++Cgk F r  nL+ H r H
  EcC054060.10 61 CEICGKGFQRDQNLQLHRRGH 81
                  *******************88 PP

2zf-C2H213.50.00022135157123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+k++  +s+ k H +t+
  EcC054060.10 135 WKCEKCSKRYAVQSDWKAHSKTC 157
                   58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-65881No hitNo description
PROSITE profilePS5015711.4895981IPR007087Zinc finger, C2H2
SMARTSM003550.0765981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355250100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-6130155No hitNo description
SMARTSM00355130135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MASQEVIANG FAHQNPSIPG SNPPPPSATK KKRNLPGTPD PEAEVIALSP KTLMATNRFL  60
CEICGKGFQR DQNLQLHRRG HNLPWKLKQR STKEPRKRVY VCPEKTCVHN HPSRALGDLT  120
GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYRCDCGTIF SRRDSFITHR  180
AFCDALAEET ARVNAASTIH PTAAYHFMGT SLLPPNLPPN LSSIFKPISS NMSTEPMINH  240
QPRNGGGLSL WMGQTSQPQE SSLGINLQGI HQLGSLNDPS ATHLYADNTC PTNNPPPSDH  300
NLSGWVFGSR FSSSTACEDI SINTPSLHHM KEGQNHHHHQ NNILSVPSLY STQHQQPASS  360
PANMSATALL QKAAQMGAAT EPSFLGSFGL KPSDNNGQQP QDQDNKFCGL FGSSQMPSSD  420
TAENITLSTM QAYPPPAKRR NITQSDDNNA SSGGGQTRDF LGVGVHTMCN PPSINGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-36131197369Zinc finger protein JACKDAW
5b3h_F7e-36131197369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035803.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9FFH31e-146IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A059A0Q10.0A0A059A0Q1_EUCGR; Uncharacterized protein
STRINGXP_010035803.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-143C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]