PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053655.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 107aa    MW: 12334.4 Da    PI: 11.1434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053655.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-063052123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++C+k F r  nL+ H r H
  EcC053655.30 30 FVCEICNKGFQRDQNLQLHRRGH 52
                  89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-62853No hitNo description
Gene3DG3DSA:3.30.160.601.9E-62952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9493052IPR007087Zinc finger, C2H2
SMARTSM003550.0173052IPR015880Zinc finger, C2H2-like
PfamPF121719.3E-63052IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035510071101IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0042545Biological Processcell wall modification
GO:0005618Cellular Componentcell wall
GO:0003676Molecular Functionnucleic acid binding
GO:0004857Molecular Functionenzyme inhibitor activity
GO:0030599Molecular Functionpectinesterase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
KKKRNLPGTP DPDAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  60
RSKEVVKKKV YICPEKTCVH HDPSRALGDL TGIKKHFSRK HARRSGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046700.15e-69PREDICTED: zinc finger protein JACKDAW
SwissprotQ9LVQ71e-62IDD1_ARATH; Zinc finger protein ENHYDROUS
SwissprotQ9SCQ69e-63IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A067EAZ39e-65A0A067EAZ3_CITSI; Uncharacterized protein
TrEMBLA0A396JNC61e-64A0A396JNC6_MEDTR; Putative transcription factor C2H2 family
STRINGXP_010046700.12e-68(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-65indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]