PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053646.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24554.8 Da    PI: 8.2489
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053646.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.21.8e-221660347
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                   +n+sn qvtfskRr g++KKA+ELS+LC+a+va+i+fs+  k +
  EcC053646.20 16 MDNESNLQVTFSKRRSGLFKKASELSTLCGADVALIVFSPGEKAF 60
                  68*************************************988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.516666IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-32665IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-27784IPR002100Transcription factor, MADS-box
CDDcd002658.37E-36779No hitNo description
PRINTSPR004041.8E-19828IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MARTTRGRQR IQMAKMDNES NLQVTFSKRR SGLFKKASEL STLCGADVAL IVFSPGEKAF  60
SFGHPNVDTV LDRFLNGNEL PQQTAGTAQL IEAHRNATIC ELNMQLTEVL GQLEMEKKRG  120
EELKKAVRTN QESHWWERPV DELSVPQLEQ LKISLFELRK NVSKETEQMV IQATNTQPFF  180
GASSSHGPPI PFQSQNGTSA PVMPPNPHQY NFGFGSGYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-19793186Myocyte-specific enhancer factor 2A
3kov_B5e-19793186Myocyte-specific enhancer factor 2A
3kov_I5e-19793186Myocyte-specific enhancer factor 2A
3kov_J5e-19793186Myocyte-specific enhancer factor 2A
3p57_A5e-19793186Myocyte-specific enhancer factor 2A
3p57_B5e-19793186Myocyte-specific enhancer factor 2A
3p57_C5e-19793186Myocyte-specific enhancer factor 2A
3p57_D5e-19793186Myocyte-specific enhancer factor 2A
3p57_I5e-19793186Myocyte-specific enhancer factor 2A
3p57_J5e-19793186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030890.11e-163PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-64AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A059ASL01e-161A0A059ASL0_EUCGR; Uncharacterized protein
STRINGXP_010030890.11e-162(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-66AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]