PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053561.140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 257aa    MW: 26831.2 Da    PI: 10.202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053561.140genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001793115123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C +C+k F ++  L  H++ H
  EcC053561.140  93 FSCAYCKKGFATSQALGGHQNAH 115
                    89******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-691129No hitNo description
Gene3DG3DSA:3.30.160.603.6E-491119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.28193120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0003712Molecular Functiontranscription cofactor activity
GO:0004869Molecular Functioncysteine-type endopeptidase inhibitor activity
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0008146Molecular Functionsulfotransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGKAPLTIGD SCPLSDSSSN VSATPDHGDA ACKRAVLALD DAKSKMKMDE ASGAAKADLM  60
LDLTLVTVGS GHKQPSSSDK VAVVGEPSAD RVFSCAYCKK GFATSQALGG HQNAHRHERM  120
IAKREREIAA MSGYGPPSTL TYGYGGVNSP YSGVHRFPAL GRLNRQALPG VGMDQPMVHR  180
VQPSWNQPGS GVMQNGPWLG HPHTMPSSLP RSEARRRPSP EGPATVAGPG QGGRPSPALT  240
GGRRPPWAGD GRRPSPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034133.11e-151PREDICTED: zinc finger protein STAMENLESS 1-like
STRINGXP_010034133.11e-150(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-16zinc-finger protein 1