PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052752.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 222aa    MW: 24668.3 Da    PI: 8.5009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052752.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000176991123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++C + F ++  L  H++ H
  EcC052752.20 69 FSCNYCQRKFYSSQALGGHQNAH 91
                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.91E-76596No hitNo description
PROSITE profilePS5015711.4276996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006888Biological ProcessER to Golgi vesicle-mediated transport
GO:0000139Cellular ComponentGolgi membrane
GO:0005801Cellular Componentcis-Golgi network
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEGMQKLEED HQRHRESKNS ALTLDLSLSR EDSCHGSNPE LDLIQGFDSD SPRNSEDTLP  60
GSETEPRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR HRIGGFAYSS MASLPLHGSY  120
NRSLGIQVHS MIHKPPHTYG HDGWSRQSLN QQPAVGRLVV QDSFRVGITT TGSSSNSGIG  180
RFDGVRKIPS AAEGMGGSWW GSVNHLDPKR DEVQKIDLSL KL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718916.11e-161PREDICTED: zinc finger protein 3
RefseqXP_018718917.11e-161PREDICTED: zinc finger protein 3
TrEMBLA0A059AKF31e-160A0A059AKF3_EUCGR; Uncharacterized protein
STRINGXP_010034000.11e-160(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-38zinc finger protein 3