PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051844.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 245aa    MW: 27707.8 Da    PI: 9.9186
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051844.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.8e-171151343
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                  i n+  r+ tf kR++g++KK +ELS+LC++e++ i++s+ 
  EcC051844.20 11 IANDAARKATFKKRKKGLMKKVSELSTLCGIEACAIVYSPY 51
                  899************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-23185IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.764149IPR002100Transcription factor, MADS-box
CDDcd002669.56E-19285No hitNo description
PRINTSPR004045.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTRKKVTLAY IANDAARKAT FKKRKKGLMK KVSELSTLCG IEACAIVYSP YQAEPEVWPS  60
TLGARRAIAR FKNMSEMDQS KRMVNQQGFI RQRIVKAEEQ LKKQLRENRE KEIGQVMYRA  120
LVGEGLQGLT IVDLNDLGWM LDKTGKEIEE RIKKLKKSAP GSEQAAPVEL QADKSSEEDN  180
GEAAPKSNAA FNDVVAAEAM QNQPWYMDLL KPRNEGNAMS LGRNDLMPSY PYKNPTPPWS  240
NFYFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLAYIANDAARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058575.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK37e-56AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A059C4I91e-180A0A059C4I9_EUCGR; Uncharacterized protein
STRINGXP_010058575.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-49AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]