PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050734.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9141.58 Da    PI: 10.8325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050734.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161349541
                  SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
        SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                  n + r + + kR+ng++KKA E SvLC+++ +v++f 
  EcC050734.20 13 NARARRIAYEKRKNGLMKKAREFSVLCGVDTCVVVFP 49
                  78899******************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-17180IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-11166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.058148IPR002100Transcription factor, MADS-box
CDDcd002661.43E-17280No hitNo description
PRINTSPR004043.7E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-161350IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGRGRTPHGL VPNARARRIA YEKRKNGLMK KAREFSVLCG VDTCVVVFPE AAASVDRPIA  60
PEVWPPDHGE ARRIIERYRS AG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026643.16e-52PREDICTED: MADS-box transcription factor 4
TrEMBLA0A059B0J01e-50A0A059B0J0_EUCGR; Uncharacterized protein
STRINGXP_010026643.12e-51(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-20M-type_MADS family protein