PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050706.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 155aa    MW: 17758.9 Da    PI: 6.0011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050706.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31001.4e-3172155183
                   EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                   f+k ltpsdv+k++rlv+pk++ae+h       e +++l++edesg+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F+
  EcC050706.10  72 FEKPLTPSDVGKLNRLVIPKQHAEKHfplV--GEATQQLSFEDESGKWWRFRYSYWSSSQSYVLTKGWSRFVKDKRLDAGDVVLFH 155
                   99*************************653..455668***********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-3864154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3068155IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-2370155No hitNo description
SMARTSM010191.9E-1472155IPR003340B3 DNA binding domain
PROSITE profilePS5086315.63672155IPR003340B3 DNA binding domain
PfamPF023627.4E-2972155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0003677Molecular FunctionDNA binding
GO:0008236Molecular Functionserine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSLNHPLSTS DGTPNTLWWT THPAMFRQPN LLLNFNPTDD DPQDEGSPPP PYVLREAPPP  60
AEPSPAEKEP MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL VGEATQQLSF EDESGKWWRF  120
RYSYWSSSQS YVLTKGWSRF VKDKRLDAGD VVLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-396915411100DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059417.11e-108PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-43Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A059DJE91e-108A0A059DJE9_EUCGR; Uncharacterized protein
STRINGVIT_08s0007g02810.t019e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-34B3 family protein