PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050352.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 235aa    MW: 24788.1 Da    PI: 7.6169
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050352.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260911.4e-282101195
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C+++Cvl+ ++     p++q +++ +++++FG+s +l+l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++++++++
  EcC050352.10   2 SCNGCRVLRKGCSESCVLRSCLrwipsPEAQGNATLFLARFFGRSDLLSLVAAVPDSQRPALFQSLLFEACGRTVNPVGGAVGLLSSGNWHVCEAAV 98 
                   6************************999999****************************************************************99 PP

        DUF260  93 ela 95 
                   e++
  EcC050352.10  99 ETV 101
                   976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.2851107IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-242100IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR SCLRWIPSPE AQGNATLFLA RFFGRSDLLS LVAAVPDSQR  60
PALFQSLLFE ACGRTVNPVG GAVGLLSSGN WHVCEAAVET VLDGGVVQAL CGGAATLAFG  120
LDQSADSPFF SPSTCRGQSL QQSLQVPASI QVDVNLALPL YDPDLSFKEK LPGKRRGKRS  180
QVTNNWPTRT TTTTTAAATT RLSSEASEVI DPPSGYDHGG VGPGGQETKL LNLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059846.11e-169PREDICTED: LOB domain-containing protein 37-like
TrEMBLA0A059BK711e-169A0A059BK71_EUCGR; Uncharacterized protein
STRINGPOPTR_0014s01770.18e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-56LOB domain-containing protein 38