PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC049474.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 262aa    MW: 28960.2 Da    PI: 6.9479
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC049474.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.8e-37261382102
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec.eaesssssasnsssg... 88 
                   ag+kdrhsk+hT++g+RdRRvRlsa +a++f+d+qd+LGfd++sk+++WL+++akpai+ ltg+      ++ +++   e+ + +  ++n   g   
  EcC049474.10  26 AGRKDRHSKVHTAKGPRDRRVRLSAYTAIQFYDVQDRLGFDRPSKAVDWLIRKAKPAIDRLTGLppfhpvPTHPNHPLqETLTPVPHNNN---Gsss 119
                   79**************************************************************98887744444333211111111111...1122 PP

           TCP  89 .....kaaksaakskksqk 102
                            s+++s+++ +
  EcC049474.10 120 ffldsFFPVSSTTSSFNFH 138
                   3344322222222233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-322797IPR005333Transcription factor, TCP
PROSITE profilePS5136933.2032886IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEAMKTPAGG ETVKVRGSGH VPRSGAGRKD RHSKVHTAKG PRDRRVRLSA YTAIQFYDVQ  60
DRLGFDRPSK AVDWLIRKAK PAIDRLTGLP PFHPVPTHPN HPLQETLTPV PHNNNGSSSF  120
FLDSFFPVSS TTSSFNFHDQ DLGLSLHSFQ EPGSGLIHAH HHLASSMQGE TPTVSHVASG  180
DLLGFDESNY QRMMGWNRAG GSELTFFMDS QQEHQEPHEV EAFSHQRGAL QSSPDMALQP  240
QPQPHPPPGV YVNDELAMGE HM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-213386154Putative transcription factor PCF6
5zkt_B2e-213386154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070292.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ9MAH83e-39TCP3_ARATH; Transcription factor TCP3
TrEMBLE0CTN31e-52E0CTN3_VITVI; Uncharacterized protein
STRINGXP_010070292.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]