PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC048452.80
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 281aa    MW: 30499.5 Da    PI: 9.674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC048452.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.91.1e-264107199
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C +dC+++p++       +q++++ +++k++G++ +l+ll + p + r+ +++sl+ eA+ r+ +P+yG+vg++++++++l+q+++
  EcC048452.80   4 SCNGCRVLRKACGDDCPIRPCLhwiktSPSQSNATLFLAKFYGRAGLLNLLLSGPAHLRPSIFKSLLHEACGRIVNPIYGSVGLLWSGSWHLCQAAV 100
                   6*********************9998766889***************************************************************** PP

        DUF260  93 elallke 99 
                   +++l+++
  EcC048452.80 101 DAVLAGD 107
                   9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5013109IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-224102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKGSCNGCRV LRKACGDDCP IRPCLHWIKT SPSQSNATLF LAKFYGRAGL LNLLLSGPAH  60
LRPSIFKSLL HEACGRIVNP IYGSVGLLWS GSWHLCQAAV DAVLAGDPIA RVSSESAIGC  120
ATPPLEAGDI RHVPKTKPSA AHSDQLRKVR SRRRRFKRSA PKTRHEEAEK AGGDGADSDE  180
PASRDSRGSR GSAADRELAE AEAGERAADG DDSELELTLR LEPRRARRAS EEPQRDQITG  240
VCDGDTRVLS SGLDVRRRLR TGSTCCLRVG SWVHSAVRKY K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036886.10.0PREDICTED: LOB domain-containing protein 40-like
TrEMBLA0A059A3691e-134A0A059A369_EUCGR; Uncharacterized protein
STRINGVIT_17s0000g03720.t013e-82(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-68LOB domain-containing protein 41