PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047493.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 354aa    MW: 39830.2 Da    PI: 8.4449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047493.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05192211120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   + C +C+k+F+r  n++ H+
  EcC047493.10 192 FACAICSKTFNRYNNMQMHM 211
                   78*****************9 PP

2zf-C2H2163.4e-05276298123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C +Cgk+F  k + ++H +++
  EcC047493.10 276 FMCRKCGKTFAVKGDWRTHEKNC 298
                   89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.54E-5188215No hitNo description
Gene3DG3DSA:3.30.160.605.4E-5192211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533192219IPR007087Zinc finger, C2H2
SMARTSM003550.86192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SMARTSM00355190239271IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.08E-6261296No hitNo description
Gene3DG3DSA:3.30.160.608.4E-6272296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704276296IPR007087Zinc finger, C2H2
SMARTSM0035535276296IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006486Biological Processprotein glycosylation
GO:0000139Cellular ComponentGolgi membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008373Molecular Functionsialyltransferase activity
GO:0008378Molecular Functiongalactosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGFRDYLATG KEEPCHQPPT FIEWLKPSIS TSSPSSSSSS CLTEPVHLAK PSTFVDSPNS  60
LHQQQQQEQR FLRETIQCLP LLSKLSETKP LKQEEGDEEE VTVVGEGRER QHGVGELRAA  120
NVAVGLHIGL PLSGVDCGYG DNLEKSKHGF DELLIKEAVH KRNLLHGYSG FNAESRFWIP  180
TPAQILVGPM QFACAICSKT FNRYNNMQMH MWGHGSEYRK GPDSLKGTQP AAMLRLPCYC  240
CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK CGKTFAVKGD WRTHEKNCGK  300
LWYCTCGSDF KHKRSLKDHI RSFGRGHSPH PSLEGFEDEK ECVTTGSEDE LARS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045228.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-124ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A059DB020.0A0A059DB02_EUCGR; Uncharacterized protein
STRINGXP_010045228.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-118WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]