PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047357.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 117aa    MW: 13234.3 Da    PI: 10.0627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047357.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-065374223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ C+k+F++   L  H++ H
  EcC047357.20 53 PCSVCHKRFRSTTALFGHMKIH 74
                  5*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.1595279IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-65385No hitNo description
Gene3DG3DSA:3.30.160.604.0E-45474IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-75476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSCHMAKNIL RREPSLAIGN GLGKARRLGY CLRENPKKSW KFLGLMENAQ ENPCSVCHKR  60
FRSTTALFGH MKIHLSKDDE RCDWCVDRGK GSGSMKSCQD PARSIHDGER LNLSLSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034405.11e-72PREDICTED: uncharacterized protein LOC104423639
STRINGXP_010034405.14e-72(Eucalyptus grandis)