PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045614.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 246aa    MW: 24955.3 Da    PI: 7.7391
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045614.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.3e-40351351100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++
  EcC045614.20  35 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHRRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSY 131
                   7***********************9989********************************************************************9 PP

        DUF260  97 lkee 100
                   l+++
  EcC045614.20 132 LQAH 135
                   9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99934136IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3935133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009561Biological Processmegagametogenesis
GO:0016192Biological Processvesicle-mediated transport
GO:0032012Biological Processregulation of ARF protein signal transduction
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0032588Cellular Componenttrans-Golgi network membrane
GO:0005086Molecular FunctionARF guanyl-nucleotide exchange factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSSNPSSSGG GGGGGGGGGS GSGGGSGSGS GSGGPCGACK FLRRKCVPGC IFAPYFDSEQ  60
GAAHFAAVHK VFGASNVSKL LLHIPVHRRL DAVVTICYEA QARLRDPVYG CVAHIFALQQ  120
QVVNLQAELS YLQAHLTTLE LPVPLPPPPP PPAMGPPLSI ADLPSASSIP ATYDLSSLFD  180
PMAQAAWMVP QRQIDFRQFE GSCGGGGSSA AGGGDLNALA RELLRRQGSP PPGCIDAMSS  240
PSSLSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1719SGGGGGGGGGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056297.11e-129PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-84LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A059C3F21e-129A0A059C3F2_EUCGR; Uncharacterized protein
STRINGGLYMA03G02620.12e-93(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-79LOB domain-containing protein 18