PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045416.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 116aa    MW: 13055.6 Da    PI: 7.5073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045416.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000297192223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +Cp C+++F++   L  H + H
  EcC045416.10 71 PCPVCDERFRSMRALFCHSKIH 92
                  5*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0557097IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-671115No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
PfamPF139120.0037294IPR007087Zinc finger, C2H2
PfamPF139120.039102116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
DLLKRTIGVR SHEVSHSQEE TGERESPLAI DNGLEDGSSS ADERRLGYYL RENPKKTWKF  60
SKLKESAQEK PCPVCDERFR SMRALFCHSK IHSGKDDESG DCGKIFSSGR VLGGHM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034406.13e-20PREDICTED: uncharacterized protein LOC104423640
STRINGXP_010034401.12e-40(Eucalyptus grandis)
STRINGXP_010034403.13e-40(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913