PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC038726.70
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 51aa    MW: 5784.72 Da    PI: 10.6014
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC038726.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45.1e-152251332
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCd 32
                  ie +s r+vtfskR +g++ KA ELS+LC+
  EcC038726.70 22 IEKESAREVTFSKRHQGLFRKAAELSILCG 51
                  899**************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.1611251IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-41251IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-141351IPR002100Transcription factor, MADS-box
CDDcd001201.43E-131451No hitNo description
PRINTSPR004049.3E-111434IPR002100Transcription factor, MADS-box
PfamPF003199.6E-152251IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-113449IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-114951IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0022891Molecular Functionsubstrate-specific transmembrane transporter activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
SPTMEEAKRG PKPRRRVECG LIEKESAREV TFSKRHQGLF RKAAELSILC G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058861.12e-25PREDICTED: agamous-like MADS-box protein AGL61
STRINGXP_010058861.17e-25(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65080.14e-10MIKC_MADS family protein