PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036619.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 147aa    MW: 16503.8 Da    PI: 10.2147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036619.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.6e-07121142223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +C+ Cg +F+ + +L++H+  H
  EcC036619.60 121 TCEECGATFKKPAYLRKHMLGH 142
                   6******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.93120145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4121143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLVFNNVRNN REVSSFLFAD LISFDRKLIG PGLIWARTGH SFEHRQARPR TTPDLQVQEV  60
PPHFSHPTAP RGQFSSLRRL PMLRKQRGSF RAASSDATID EVEAAMAQGV EVKEGAKANN  120
TCEECGATFK KPAYLRKHML GHSLEVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-10transcription factor IIIA