PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034992.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 304aa    MW: 32752.5 Da    PI: 6.8408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034992.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034112134123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C+ C++ Fs++  L  H++ H
  EcC034992.10 112 FACNFCKREFSTSQALGGHQNAH 134
                   78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-6109140No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4110138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAIVPCPSEG PSISAASGET LACDNHRHKA KNRLTMNEKT AEAEAEAEAK PKPAPHHHAA  60
NQEIPIDDDD DGGVRSTDLD LKLFNQGLPS NARKSGESST DENCKVPKAR VFACNFCKRE  120
FSTSQALGGH QNAHKQERAL AKQRKGMEAD LLGVHPHMSY YYSGVPQMPL YGSIGRALGI  180
RHESMIHKPS YPSSVLPGYR FGGLRQVSGV NPNSRPPLDR TRVESLQAYG GASGLGEPPP  240
PPPPPPPPPA TSFDGSASFV VHQAQVDVRQ DNNRPMKKEG DHPEEEVPQS DGSDPSGIDL  300
TLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026900.10.0PREDICTED: zinc finger protein 8
TrEMBLA0A059B2R40.0A0A059B2R4_EUCGR; Uncharacterized protein
STRINGXP_010026900.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-21C2H2 family protein