PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033331.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 49aa    MW: 5595.61 Da    PI: 10.7357
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033331.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.7e-16343144
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                  ++i+n + rqvtfskRr g++KK   LSvL da+v++iifs tg
  EcC033331.10  3 EKIDNLMARQVTFSKRRGGLIKK---LSVLNDADVSLIIFSATG 43
                  579********************...***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.783149IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-10249IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-14246IPR002100Transcription factor, MADS-box
PfamPF003193.2E-13443IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
MIEKIDNLMA RQVTFSKRRG GLIKKLSVLN DADVSLIIFS ATGFRYSKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.18e-16AGAMOUS-like 24