PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC033156.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 236aa    MW: 25793.7 Da    PI: 6.4046
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC033156.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.98.1e-3971071100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+
  EcC033156.10   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLANLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVFNLQAQLAS 103
                   7*************************89********************************************************************9 PP

        DUF260  97 lkee 100
                   lke+
  EcC033156.10 104 LKEQ 107
                   9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2156108IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLANLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVFNLQAQ LASLKEQATQ SLCAPSSTRG  120
SLNEKYSGNK VIPNQALDVQ SWLHMANPNN LPHQFSLDSM SNVNAMPYYD NGSMDSSSAG  180
NNYDNSLVLE ENISFGSLEE ASGGSISSMD MQTSNRQWSF RDGDDLHSFA YGYIHH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039047.11e-177PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J72e-67LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A059D2Q11e-177A0A059D2Q1_EUCGR; Uncharacterized protein
STRINGVIT_07s0005g03020.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-68lateral organ boundaries-domain 29