PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032904.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 238aa    MW: 25518.7 Da    PI: 8.379
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032904.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292.1e-40321321100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC+++Cv+apyf a+q p++fa+vh++FGasn +kll+++p ++r da+ +l+yeA arardPvyG+vg+i++lqqq+ +l+aela+
  EcC032904.10  32 PCGACKFLRRKCVRGCVFAPYFDADQgPAHFAAVHRVFGASNASKLLARVPAHRRLDAVVTLCYEALARARDPVYGCVGHIFALQQQVVNLQAELAY 128
                   7************************999********************************************************************* PP

        DUF260  97 lkee 100
                   ++++
  EcC032904.10 129 VQAR 132
                   9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.29131133IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3932130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSNKNDNNTA SNSDPNGSSS SSTASGGGGG GPCGACKFLR RKCVRGCVFA PYFDADQGPA  60
HFAAVHRVFG ASNASKLLAR VPAHRRLDAV VTLCYEALAR ARDPVYGCVG HIFALQQQVV  120
NLQAELAYVQ ARLASLQHFP LQPLPPQSPP QSELQSSSDT ALLSEVVPNL TLPNMYFNSY  180
QLQNGALAGL QNFRMNLAEE REIEDAQLHS LARVFISSSR HLPPPGVRFD GSSPGKNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056298.11e-140PREDICTED: LOB domain-containing protein 19
SwissprotO813221e-64LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A059C4181e-140A0A059C418_EUCGR; Uncharacterized protein
STRINGPOPTR_0014s06580.12e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-55LOB domain-containing protein 19