PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032639.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 175aa    MW: 19452.8 Da    PI: 6.6518
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032639.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.21.3e-4311109199
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                   +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++
  EcC032639.20  11 PCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDTVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDAT 107
                   7*********************************************************************************************998 PP

        DUF260  98 ke 99 
                   ++
  EcC032639.20 108 NA 109
                   76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.41810111IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-4311108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASSSGYSSS PCAACKFLRR KCLPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEVL  60
PHQREDTVNS LAYEAEARLK DPVYGCVGAI SVLQRQVIRL QKELDATNAD LIQYTCREMP  120
STVSRPVHYR RKNNNNMVQV YGDGGFDQNC GGYYHPNAWS NVHDGDGQEG DDGGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033314.11e-132PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ9FML41e-67LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A059AGJ21e-131A0A059AGJ2_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s35280.15e-81(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.46e-66LBD family protein