PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031214.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 244aa    MW: 28301 Da    PI: 5.0506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031214.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-063762123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  + Cp  dCgk++ + + Lk+Hi + H
  EcC031214.10 37 HICPypDCGKRYAHEYKLKNHIASqH 62
                  679999****************9988 PP

2zf-C2H215.74.2e-05101126123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   y Cp   C+k + + + Lk H+r+ H
  EcC031214.10 101 YACPyeTCDKAYIHEYKLKLHLRReH 126
                   89**********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.64E-91763No hitNo description
Gene3DG3DSA:3.30.160.601.3E-102360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0033762IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7253767IPR007087Zinc finger, C2H2
PROSITE patternPS0002803962IPR007087Zinc finger, C2H2
SuperFamilySSF576675.38E-696125No hitNo description
Gene3DG3DSA:3.30.160.601.9E-896123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.182101126IPR007087Zinc finger, C2H2
SMARTSM003550.039101126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
WMTGDTREPC MMDEMQAFSL DFNLRSHMKT HSQENYHICP YPDCGKRYAH EYKLKNHIAS  60
QHEKNAAVEV TKYTPPPEKI TTKASKPSSG AYGSASSDRP YACPYETCDK AYIHEYKLKL  120
HLRREHPEYM ADENAENATR NVDHEMDEAS DQDNYSRKRA NGKSQKQSRQ KLNLKTPPAK  180
PAKRKGAASP TPVTLNVVKK PWPVKEDIYE EEDSEETEED QENVEGWRYA ENNEDDDEET  240
EYED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065348.11e-167PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X2
SwissprotQ2V3L36e-73Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A059B9Q31e-167A0A059B9Q3_EUCGR; Uncharacterized protein
STRINGPOPTR_0022s00900.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.34e-68C2H2 family protein