PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC029620.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 322aa    MW: 36190.2 Da    PI: 9.2409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC029620.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.7e-07168187120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++Cp C k+F+r  nL+ H+
  EcC029620.30 168 FSCPVCQKTFNRYNNLQMHM 187
                   89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-6161191No hitNo description
Gene3DG3DSA:3.30.160.602.4E-6168187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97168195IPR007087Zinc finger, C2H2
PfamPF128742.0E-4168187No hitNo description
SMARTSM003550.028168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SMARTSM00355180265286IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
PCCIFPDIAP PAVRMRDPYS NSVLQWSNSM FLPLQPRYSQ PFSYFSSSNL VTGAHCQTSA  60
SSPPFEALPL INRLGLHMPD EPSPSHGSSK QDESLFLQKA DADRDNDNGV TVALQIGLPV  120
TPCPAPELKK EETTVDAADA IRCRLDKLRQ GHYWIPTPKE ILAGPQQFSC PVCQKTFNRY  180
NNLQMHMWGH GSEYRKGPES LKGTGSTKAR AQESNDGLML QRIPCYCCAP GCKHNIRHPR  240
ARPLKDFRTL QTHFKRRHGY GSKPFTCRKC SNKSFAVKGD WRTHEKNCGK IWYCVCGSDF  300
KHKRSLNDHV RAFGLGHAPS FA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032420.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ8W0314e-94ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A059ACJ60.0A0A059ACJ6_EUCGR; Uncharacterized protein
STRINGXP_010032420.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-96WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]