PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC027798.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 234aa    MW: 26285.7 Da    PI: 7.8567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC027798.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-055374223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ C+k+F++   L  H++ H
  EcC027798.20 53 PCSVCHKRFRSTTALLGHMKIH 74
                  5*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2845279IPR007087Zinc finger, C2H2
SMARTSM003550.00915274IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.49E-55382No hitNo description
PfamPF139123.2E-65476IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-45474IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872Molecular Functionmetal ion binding
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCHMAKNIL RREPSLAIGN GSGKARRLGY CLRENPKKSW KFLGLMENAQ ENPCSVCHKR  60
FRSTTALLGH MKIHLSKDDE RCDWYADRGK GSGSVKSCQD RARPIHDGER LNFSLSSEDR  120
YVGLSKKTKG DLLLSVLFDD EAMHMTRRKR TPRVSFDVDE RTEGVLFSAP NGFLLSSEAE  180
QDQANEAAVE LMMMSRGEAG FNSSGLGIEH FRKSSALDFI DMEKLTITEA SEDN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034406.11e-161PREDICTED: uncharacterized protein LOC104423640
STRINGXP_010034406.11e-160(Eucalyptus grandis)