PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC027683.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26079.2 Da    PI: 6.3719
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC027683.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-162364445
                  -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  en   r vtf+kRr+g++ K  EL++LC++ev +i fs+  k
  EcC027683.20 23 ENVDDRRVTFTKRRTGLFEKGAELCILCGVEVVIITFSEGKK 64
                  78889*********************************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.0071272IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-221271IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-211382IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-151434IPR002100Transcription factor, MADS-box
PfamPF003193.9E-162368IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-153449IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-154970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MASGNNSKKA TKGRQKIEIK KRENVDDRRV TFTKRRTGLF EKGAELCILC GVEVVIITFS  60
EGKKAFCFGH PEADRILQGY LDGAAGINPT GSGDSGCRGK EGEGGSGDNA AYLQTTRESK  120
QRYFEAVERL EKEKADLKLM QETGRAESGG FWWEQPIEHL GLEELEYFHQ SLEKLAGKVL  180
MKLDPGRHQD SELDPGRSQD SALALQHDVA TGDGWFAQDP SSSWPLPLGK NSRGQF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732145.14e-84PREDICTED: agamous-like MADS-box protein AGL62 isoform X1
RefseqXP_018732146.14e-84PREDICTED: agamous-like MADS-box protein AGL62 isoform X2
RefseqXP_018732147.14e-84PREDICTED: agamous-like MADS-box protein AGL62 isoform X3
TrEMBLA0A218X9331e-52A0A218X933_PUNGR; Uncharacterized protein
STRINGXP_010064880.15e-80(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31AGAMOUS-like 62