PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026037.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 54aa    MW: 6133.38 Da    PI: 10.5453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026037.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.6e-181152344
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                  i n+  r +t+ kR++g++KKA+E  +LC+++ ++ii+++ g
  EcC026037.10 11 IPNEKARRITYEKRKKGMMKKAQEFTTLCGVDTCMIIYGPAG 52
                  88999**********************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.71E-19152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.25154IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-14154IPR002100Transcription factor, MADS-box
CDDcd002661.55E-19253No hitNo description
PRINTSPR004046.4E-12323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-181152IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-123854IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MGRRKLVLEL IPNEKARRIT YEKRKKGMMK KAQEFTTLCG VDTCMIIYGP AGSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037296.11e-29PREDICTED: agamous-like MADS-box protein AGL82
RefseqXP_018720655.11e-29PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A059A6L72e-28A0A059A6L7_EUCGR; Uncharacterized protein
STRINGXP_010037296.14e-29(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-17M-type_MADS family protein