PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC025833.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 175aa    MW: 19096.3 Da    PI: 6.895
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC025833.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.7e-4410108199
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                   +CaaCk+lrrkC +dCv+apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++
  EcC025833.10  10 PCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDAT 106
                   7*********************************************************************************************998 PP

        DUF260  98 ke 99 
                   ++
  EcC025833.10 107 NA 108
                   76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2769110IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-4310107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000165Biological ProcessMAPK cascade
GO:0009814Biological Processdefense response, incompatible interaction
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009866Biological Processinduced systemic resistance, ethylene mediated signaling pathway
GO:0004707Molecular FunctionMAP kinase activity
GO:0004708Molecular FunctionMAP kinase kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASSSYSNPP CAACKFLRRK CLPDCVFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVLP  60
HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVIRLQ KELDATNADL MRHACNEMAG  120
NTSLPGPNPG HNYSGSPRES SRYNENNPGY YYPPNYNPWS GGPSGDPDQG GGSAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029135.11e-128PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q38e-69LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A059AQE91e-128A0A059AQE9_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s35280.12e-81(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-70LOB domain-containing protein 25