PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC025362.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 69aa    MW: 7766.88 Da    PI: 8.6581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC025362.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-062044123
                  EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                  y+C+   Cgk F ++s LkrH   H
  EcC025362.10 20 YVCHyeGCGKKFLDSSKLKRHFLIH 44
                  9********************8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-14257No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.4E-151840IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.9212049IPR007087Zinc finger, C2H2
SMARTSM003550.00242044IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802244IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-114160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
IFIDAGALRK HSHIHGERQY VCHYEGCGKK FLDSSKLKRH FLIHTGERDF VCPYEGCGKV  60
VNQSGAPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-1716416107PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065347.15e-36PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L39e-30Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A059B9H65e-36A0A059B9H6_EUCGR; Uncharacterized protein
STRINGVIT_12s0035g00660.t012e-34(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.37e-32C2H2 family protein