PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015983.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 112aa    MW: 12530.8 Da    PI: 4.5952
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015983.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26062.51.1e-1966244100
        DUF260  44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                   ++ ++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e
  EcC015983.40   6 SIRQELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDVLQNQLALAQAE 62 
                   567899**********************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.421163IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-17860IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEERFSIRQE LPEHQRSDAV SSMVYEANAR MRDPVYGCVG AISSLQQQVD VLQNQLALAQ  60
AEVVHMRLQT PQFPSTSSSA IAATNNDCSH SRRSYYPLNG VEQADVEDSL WS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064044.13e-76PREDICTED: LOB domain-containing protein 4-like isoform X3
SwissprotQ9SA515e-27LBD3_ARATH; LOB domain-containing protein 3
TrEMBLA0A059C0A23e-68A0A059C0A2_EUCGR; Uncharacterized protein
STRINGPGSC0003DMT4000222862e-35(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-18LOB domain-containing protein 4