PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC013638.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 380aa    MW: 43272.2 Da    PI: 6.6092
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC013638.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005286108323
                   ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                   C+   Cgk+F +   L++H   H
  EcC013638.20  86 CSyeGCGKTFIDAGALRKHSHIH 108
                   77779**************7766 PP

2zf-C2H216.42.5e-05113137123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   y+C+   Cgk F ++s LkrH   H
  EcC013638.20 113 YVCHyeGCGKKFLDSSKLKRHFLIH 137
                   9********************8877 PP

3zf-C2H222.23.6e-07143167123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   ++Cp   Cgk Fs   nL++H++tH
  EcC013638.20 143 FVCPyeGCGKAFSLDFNLRSHMKTH 167
                   89**********************9 PP

4zf-C2H218.17.6e-06173198123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   + Cp  dCgk++ + + Lk+Hi + H
  EcC013638.20 173 HICPypDCGKRYAHEYKLKNHIASqH 198
                   679999****************9988 PP

5zf-C2H214.97.5e-05237262123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   y Cp   C+k + + + Lk H+r+ H
  EcC013638.20 237 YACPyeTCDKAYIHEYKLKLHLRReH 262
                   89**********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-1479110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003284108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78384113IPR007087Zinc finger, C2H2
PROSITE patternPS00028086108IPR007087Zinc finger, C2H2
SuperFamilySSF576673.65E-887137No hitNo description
Gene3DG3DSA:3.30.160.602.4E-14111133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024113137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921113142IPR007087Zinc finger, C2H2
PROSITE patternPS000280115137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-14124177No hitNo description
Gene3DG3DSA:3.30.160.601.3E-20134169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.6E-4143167IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695143172IPR007087Zinc finger, C2H2
PROSITE patternPS000280145167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-7170194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003173198IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725173203IPR007087Zinc finger, C2H2
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-8232259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.51E-6232261No hitNo description
SMARTSM003550.039237262IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182237262IPR007087Zinc finger, C2H2
PROSITE patternPS000280239262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
WSLITPTTSS TGAPSSRPRP PPSSGSRNGT LFRSICXXXD VVATGGKCYV LKWVTESTLK  60
ALREKEKEPK EPEPEPEPTT EVLFLCSYEG CGKTFIDAGA LRKHSHIHGE RQYVCHYEGC  120
GKKFLDSSKL KRHFLIHTGE RDFVCPYEGC GKAFSLDFNL RSHMKTHSQE NYHICPYPDC  180
GKRYAHEYKL KNHIASQHEK NAAVEVTKYT PPPEKITTKA SKPSSGAYGS ASSDRPYACP  240
YETCDKAYIH EYKLKLHLRR EHPEYMADEN AENATRNVDH EMDEASDQDN YSRKRANGKS  300
QKQSRQKLNL KTPPAKPAKR KGAASPTPVT LNVVKKPWPV KEDIYEEEDS EETEEDQENV  360
EGWRYAENNE DDDEETEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-35861978119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065347.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L31e-135YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A059B9H60.0A0A059B9H6_EUCGR; Uncharacterized protein
STRINGXP_010065347.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-125C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]