PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012837.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 383aa    MW: 41819.6 Da    PI: 8.9054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012837.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05148171123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   ++C+ Cg++F  + +L++H  t H
  EcC012837.10 148 FPCTSCGEVFQKPQLLEQHHATrH 171
                   89*****************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66148176IPR007087Zinc finger, C2H2
PROSITE patternPS000280150171IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-14173382No hitNo description
Gene3DG3DSA:3.90.228.108.0E-5185288IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.1E-4317382IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASSGSSPSS SFFGKFRSLL LLLLLHLGCF IFSSSSSSVS AASTTIKKRK ASPTASHFKP  60
RKALSSSWSY LKGILISKPR ASHPPTPSLT SARNSQRSIA SLVSPAEAHA LAELTSTPPR  120
EKTWPGTLLQ EEPDHADLFF PLRNDAIFPC TSCGEVFQKP QLLEQHHATR HAVSELIGED  180
SGRNIVQIIF QTGWPAGKSL RVLRILKIHH GPRTLSRFEE YRESVKTRAA RASRRRDERC  240
VADGNELLRF HCSTFTCDLG QDGNSSICNQ QYCNVCGIIK SGFSKKLDGI STLSSGWKAH  300
GTLPDDVVEE FGFMHVKRAM LVCRVIAGRV GSEADDVDKE EGGGFDSVVG RGGSGALTRL  360
DDEDLLVFNP RAVLPCFVIV YTV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033020.10.0PREDICTED: uncharacterized protein LOC104422399
TrEMBLA0A059AFW70.0A0A059AFW7_EUCGR; Uncharacterized protein
STRINGXP_010033020.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-101C2H2 family protein