PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007564.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 472aa    MW: 52393.7 Da    PI: 5.9415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007564.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086124144323
                   ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                   Cp+C++sF++ ++   H  ++
  EcC007564.60 124 CPICNRSFRSEEEVSEHVDSC 144
                   ************999998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.8E-72653No hitNo description
SMARTSM007341.1E-4121145IPR006642Zinc finger, Rad18-type putative
CDDcd092121.25E-20174269No hitNo description
SuperFamilySSF1435032.35E-18187268IPR018997PUB domain
SMARTSM005801.8E-19187251IPR018997PUB domain
PfamPF094091.6E-15188261IPR018997PUB domain
SuperFamilySSF542361.6E-11334447IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.8E-7351444No hitNo description
PROSITE profilePS500339.174363447IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006281Biological ProcessDNA repair
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDDVKDKVKG FMKKVNNPFS GASSTGKFKG QGRVLGSSSS GSTNPIPAHP PQSVQSQPNP  60
PPPQVSNPRP SQPPKAAVPD RGKLGSARNA EPDRKPVNGF DPFGSLITTG KRSQNGYSLN  120
IVDCPICNRS FRSEEEVSEH VDSCVAESRV EYDNEVGAQG LPSDEAEGRS ELEACVGTFV  180
SAKPPESSVD VVLKLFRNIA REPENAKFRR VRMGNPKIKE AIGDVAGGVE LLEFVGFELK  240
EEDGEMWAMM DQPGEEQIRL VNRAVVLLEP KKFEESKKID DAPAVVPSVV DKPMEKEKID  300
RQIRVFFSVP ENIAAKIELP ASFYNLSMDE VRREAEMRKK KMAESQLLIP KSYREKQLKA  360
GRKRYTRTIL RVQFPDGVVL QGVFAPWELT GSLYEFVSSA LKDPCLEFEL MHPVLIKRRV  420
IPHSPEPGQR ATTLDDEDLV PSALIKFRPI ETDSAVFTGL RNELLEISEP LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifs_A2e-1531444719146Tether containing UBX domain for GLUT4
5ifs_C2e-1531444719146Tether containing UBX domain for GLUT4
5ifw_A9e-1631844723146Tether containing UBX domain for GLUT4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066580.10.0PREDICTED: plant UBX domain-containing protein 2
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A059BE780.0A0A059BE78_EUCGR; Uncharacterized protein
STRINGXP_010066580.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98351618
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]