PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007034.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 1441aa    MW: 159588 Da    PI: 6.2579
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007034.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002813291354123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                    ++C    C ++F+++ +L++H r+ +
  EcC007034.30 1329 HRCDmeGCRMRFKTRAELTVHKRNrC 1354
                    789999****************9877 PP

2zf-C2H212.70.0003913531376223
                    EET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                    +Cp   Cgk+Fs++ + + H+r+H
  EcC007034.30 1353 RCPveGCGKRFSSHKYAVLHQRVH 1376
                    69999*****************99 PP

3zf-C2H211.50.0009314121438123
                    EEET..TTTEEESSHHHHHHHHHH..T CS
       zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                    ykC+   Cg sF+  s++ rH r+  H
  EcC007034.30 1412 YKCKveGCGLSFRFVSDFSRHRRKtgH 1438
                    99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-151556IPR003349JmjN domain
PROSITE profilePS5118313.9931657IPR003349JmjN domain
PfamPF023751.1E-151750IPR003349JmjN domain
SuperFamilySSF511973.57E-27212244No hitNo description
SuperFamilySSF511973.57E-27292462No hitNo description
PROSITE profilePS5118434.124295464IPR003347JmjC domain
SMARTSM005584.9E-48295464IPR003347JmjC domain
PfamPF023732.5E-36329447IPR003347JmjC domain
SMARTSM003551113291351IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.09213521381IPR007087Zinc finger, C2H2
SMARTSM003550.02513521376IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.86E-613521388No hitNo description
Gene3DG3DSA:3.30.160.601.9E-513531380IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013541376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-913811406IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15713821411IPR007087Zinc finger, C2H2
SMARTSM003550.01213821406IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013841406IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-1013921434No hitNo description
Gene3DG3DSA:3.30.160.603.8E-1114071435IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.6414121441IPR007087Zinc finger, C2H2
SMARTSM003550.2214121438IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014141438IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008080Molecular FunctionN-acetyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1441 aa     Download sequence    Send to blast
MGNVEIPDWL MGLPLAPTFR PTDTEFADPI AYISKIEKEA SAFGICKIVP PLPRPSKKYV  60
FGNLNRSLLK CPESGLGSGS GLGSGGGSQN ALRKPGSEDN GSDGETKAVF TTRQQELGQS  120
AKRTKGPGSN AHSGVQKQVW QSGETYTLEQ FEAKSRAFGR SQLGMVKEAS PEVIEALFWQ  180
AASEKPIYVE YANDVPGSGF GEQDGRFRYF HRRRRMKMDY HRHREGTDSK NNEVDNVQDS  240
HRSETKDLSR GDDSSGLETH KSSTSQSGLM TEETSRACRR SNSGSNELEG TAGWKLSNSP  300
WNLQVIARSS GSLTRFMPDD IPGVTSPMIY IGMLFSWFAW HVEDHELHSM NFLHMGSPKT  360
WYAVPGDYAF SFEEVLRKEA YGGNMDRLAV LSLLGEKTTL LSPEVIVAAG IPCCRLIQNP  420
GEFVVTFPRA YHIGFSHGFN CGEAANFATP QWLRFAKEAA VRRAAMNYLP MLSHQQLLYL  480
LTMSFVSRVP MSLIPGARSS RLKDRLREER ELSVKKAFLE DILNENDLLS SLLGKESTIH  540
AVIWNPHMLP SLSKGSQSPD GTAAISSSEK ENSHHHSGND SSINLFKEMT MFMEALNDSY  600
VDKDDLLFDF QVDSGTLPCV ACGILGFPFM SVIQPSETAS AALLPTKHDT QQTCEDRSDI  660
SDTASPLMQL QVPSSTDSEK GMGSSGGSRR PRIFCLEHAI QTEELLRSKG GANVLVICHS  720
DYQKMKAYAG AIAEEIDVSF KYKDIPFDPA SEEDLNLIDL AIDDQECTGY RDDDWTSKLG  780
INLRCCVKAR KNSPSNQVQH ALTLGGLFCD DSPSTIFNLK WKSRKSRSRT RLGTPEKCEP  840
CETLQRKDPE VSRNKLDSDA VRKEEIILQY TRRNAKFKSG SSTGTSRSHG CYDKQPVEVS  900
LASAGEVHLK SNNQTDNTYC GTESPVCETA DLPVGLGDVS HEIQVLEATT DLTLDLIPAQ  960
VASSLANVTT YVGNVEVQII NQASEEMNVK QQSVRSATYI SQRHSENEFS QNLGGQNEIL  1020
VSTDICFRTV KETEENLNIL KVTKTTEVSD SDVVNDSEVA AVPDARSPSS SLCAKLTSGC  1080
EVHEETALLE LKDGHNVNGN AVVCAEATRC GAPMGPHPHV CSGSDEQEDE IHRTVNQSVP  1140
LLIEARTEAP EATSSEEQGR SYGSAYCKSP EKDRTANATG DENPVICSVE IMDQQSAASD  1200
QGCSHVQRDS NDSNGETNDE DPPCQDDREP QTMESTEVDQ VSTTRRRRKR KSELETIAED  1260
QLNCSGFIRS PCEGLRSRAG KETTNGSDCI SSSGYENPAK KARESRKEVK PRKETVSFDD  1320
KKEKRGGSHR CDMEGCRMRF KTRAELTVHK RNRCPVEGCG KRFSSHKYAV LHQRVHEDDR  1380
PLKCPWKGCI MTFKWAWART EHIRVHTGER PYKCKVEGCG LSFRFVSDFS RHRRKTGHYV  1440
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A9e-55271478138346Transcription factor jumonji (Jmj) family protein
6ip4_A9e-55271478138346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112441250RRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067320.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A059BH790.0A0A059BH79_EUCGR; Uncharacterized protein
STRINGXP_010067320.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]