PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006049.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 317aa    MW: 34878.6 Da    PI: 6.3897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006049.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-05251273123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C+ C++sF++ + L  H++ H
  EcC006049.10 251 YVCTLCNMSFPTGYALGGHMSGH 273
                   9*******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-7251273IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556251278IPR007087Zinc finger, C2H2
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCLTGLERYL TISLHLLEIH GSVLPTMEAQ ANCPRGLRVG NLLPIMPDPT QRAFEFPNNI  60
QTTYSPNRFI LPQFSFYNPV AFGSSLSPDV ESNALILVNN QVHASYLISD SSRVFEPSFS  120
MVDVSGLISL LGDMTNLQYC FEPFNGSIYR INRHPYGDRN GLTSFLDNAG PHCALVIEPF  180
RVGILPSSLY APEFIPMRSQ QVPLDTEVAT QVLGFRGTAG FMSNNSWLRN SQEDLLRMRG  240
STPQSNFPRN YVCTLCNMSF PTGYALGGHM SGHARKRKLE ALLNATENLQ PGAGGSSPEA  300
ATSQGFENAS VVKVEFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010044974.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-06salt tolerance zinc finger