PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003968.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 106aa    MW: 12268.8 Da    PI: 9.6858
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003968.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.7e-191463150
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                  krien+ +r +tfskRr gi K A+EL +LC aev v+++s++gk + ++
  EcC003968.30 14 KRIENEERRLITFSKRRSGIYKIASELVTLCRAEVGVVVLSPSGKPFSFA 63
                  79******************************************977775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-22665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.184666IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-24781IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-17828IPR002100Transcription factor, MADS-box
PfamPF003192.2E-211562IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
WQENRRGHQR IEMKRIENEE RRLITFSKRR SGIYKIASEL VTLCRAEVGV VVLSPSGKPF  60
SFAHPSIDTV ANQFLNRNPP PIDGSYALVE SNRQARINEL NQQYDE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018722168.15e-67PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A059C7982e-64A0A059C798_EUCGR; Uncharacterized protein
STRINGXP_010059074.15e-70(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62