PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003387.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 139aa    MW: 16075 Da    PI: 4.6629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003387.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26055.81.4e-17147242100
        DUF260  42 vlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                     +  ++lpe++r+da++s++yeA  r+rdPvyG++g i++lq q++ql+a+la+ ++e
  EcC003387.10  14 TFRNFQTLPESQRDDAVTSMIYEASTRIRDPVYGCAGAISRLQMQISQLHAQLAKSQAE 72 
                   56678999**********************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.261173IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-151770IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
HYLYEEQLID EGTTFRNFQT LPESQRDDAV TSMIYEASTR IRDPVYGCAG AISRLQMQIS  60
QLHAQLAKSQ AELISMQIQR ANLTEQLHMT KSQESLPQQS VKGLLNNPYD YQINSCLDDY  120
NGFGSFWEPL WTWLMGRAY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056894.14e-75PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR04e-30LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A061GTD18e-40A0A061GTD1_THECC; LOB domain-containing protein 1
STRINGGLYMA13G40370.22e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-31LOB domain-containing protein 1