PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002805.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 242aa    MW: 26858.6 Da    PI: 7.5847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002805.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002696118123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++C k F ++  L  H++ H
  EcC002805.10  96 FECQYCFKEFANSQALGGHQNAH 118
                   89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.66E-693123No hitNo description
Gene3DG3DSA:3.30.160.602.5E-494122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2496123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSRDQIAREV STSSNLLSLT WVSENGGSNG SCAEKKLKLF GFELNPPKND PTCSKLESPE  60
GDESVNSSNT VKEKSSARAT TDHHHQVDDE SHNKKFECQY CFKEFANSQA LGGHQNAHKK  120
ERLKKKRLQI QARKASLHQY LQPLQNNLHL FNFQGSASTS SSGSWFFYEP YSNSSDHQFT  180
LYDESQISFS PESRMFPLTC GERSGGSYHL PMDTAGSAGP KQISCKSLDL QLGLSVQSNI  240
PG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043824.11e-154PREDICTED: zinc finger protein 5
TrEMBLA0A059D5X41e-153A0A059D5X4_EUCGR; Uncharacterized protein
STRINGXP_010043824.11e-153(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.14e-15zinc finger protein 5