PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001560.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 17951.9 Da    PI: 6.2783
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001560.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.5e-102331950
                  HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
        SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeys 50
                  gi KKA+EL +LC+ ev v ifs++gk y ++
  EcC001560.40  2 GIYKKASELVTLCGSEVGVAIFSPSGKPYSFA 33
                  9**************************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.484136IPR002100Transcription factor, MADS-box
SMARTSM004320.0022135IPR002100Transcription factor, MADS-box
PfamPF003192.3E-12132IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-14152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
SGIYKKASEL VTLCGSEVGV AIFSPSGKPY SFAHPSIDSI ATRFRNRNHP QNVGANNLVE  60
SYRRLRIDEL NQQHDELVDQ INDDKARGKT LKQMTEERDG EGWWEAPIEE LSLEELKQMK  120
ARMVELRRNL QGSITVRNQG APSSEGETSN QRNNPSATIA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059075.11e-117PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A058ZUL31e-114A0A058ZUL3_EUCGR; Uncharacterized protein
STRINGXP_010059075.11e-116(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-31AGAMOUS-like 61