PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000949.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 222aa    MW: 24635.8 Da    PI: 6.0244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000949.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009192208117
                   EEETTTTEEESSHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                   + C +C+k+F+r  n++
  EcC000949.10 192 FACAICSKTFNRYNNMQ 208
                   78*********988765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGFRDYLATG KEEPCHQPPT FIEWLKPSIS TSSPSSSSSS CLTEPVHLAK PSTFVDSPNS  60
LHQQQQQEQR FLRETIQCLP LLSKLSETKS LKQEEGDEEE VTVVGEGGER QHGVGELRAP  120
NVAVGLHIGL PLGGVDCGYG DNLEKSKHGF DELLIKEAVH KRNLLHGYSG FNAESRFWIP  180
TPAQILVGPM QFACAICSKT FNRYNNMQVI NSLIDWSTVI FH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045228.11e-132PREDICTED: zinc finger protein WIP3
TrEMBLA0A059DB021e-131A0A059DB02_EUCGR; Uncharacterized protein
STRINGXP_010045228.11e-131(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.13e-16WIP domain protein 3