PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028177.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 186aa    MW: 19725.7 Da    PI: 11.6902
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028177.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP70.17e-2221062298
         TCP  22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesssssasnsssg........... 88 
                 vRls+++a++f+dLqd LGfd++sk+ieWL+++a  ai +l+ +                     +          + s s      g           
  Do028177.1   2 VRLSVPTAIQFYDLQDCLGFDQPSKAIEWLINAASDAIEKLPALdlsafaalpgpgeadagkvkqQ----------QGSRS------Gggstsetskgs 84 
                 8*******************************************7766666655543333332210..........11111......111112223333 PP

         TCP  89 ............kaaksaaksk 98 
                             + ++ a ++ 
  Do028177.1  85 elsfsrsgarggRGRRRARQGG 106
                 3334443344442222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136922.82142IPR017887Transcription factor TCP subgroup
PfamPF036345.7E-192105IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
CVRLSVPTAI QFYDLQDCLG FDQPSKAIEW LINAASDAIE KLPALDLSAF AALPGPGEAD  60
AGKVKQQQGS RSGGGSTSET SKGSELSFSR SGARGGRGRR RARQGGHRHQ HLGAGRVLHR  120
AAHRRRGAAR GGATEEAARV AREGGSEGGT RRRRWLPEAR WGREGCAGGG REGGRRGHFG  180
LYAVLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-152431455Putative transcription factor PCF6
5zkt_B5e-152431455Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028177.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ93V432e-21TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A3L6TG381e-42A0A3L6TG38_PANMI; Uncharacterized protein
STRINGPavir.Ia00505.1.p9e-43(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-18TCP family protein
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]