PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028091.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 218aa    MW: 23442.8 Da    PI: 4.6898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028091.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-172372255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  Do028091.1 23 RYKGVRLRK-WGRWVSEIRMPNS---RERVWLGSYESAEKAARAFDAAAVCLRG 72
                7******99.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-282383IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-182382IPR016177DNA-binding domain
SMARTSM003802.0E-322387IPR001471AP2/ERF domain
PfamPF008471.6E-102372IPR001471AP2/ERF domain
CDDcd000182.51E-182383No hitNo description
PROSITE profilePS5103221.9312381IPR001471AP2/ERF domain
PRINTSPR003671.3E-82435IPR001471AP2/ERF domain
PRINTSPR003671.3E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDDGAGASRS DGEGSPLPAA ERRYKGVRLR KWGRWVSEIR MPNSRERVWL GSYESAEKAA  60
RAFDAAAVCL RGSRAGSLNF PESPPNVRHV PGALPTPEQI QAEAVRHAHQ PASPAASSAS  120
TTVSLSQQAT PTEEASIHYS SGAAFAGSDD ALDWSFMDTL PLMPASSAGT NAHIVPAMDD  180
FMYGSPHPMM PPSEEASSQD MIDGDDDHIF ISDDLWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-131181272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973610.11e-112ethylene-responsive transcription factor ERF018
TrEMBLA0A1E5UIC71e-157A0A1E5UIC7_9POAL; Uncharacterized protein
STRINGPavir.Fb01602.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-22ERF family protein