PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027166.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 307aa    MW: 32521.9 Da    PI: 8.2751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027166.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12243288655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Do027166.1 243 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 288
                 689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-16240301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.91E-13241292No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14242300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRRFLPGGGG EPSSSSSSGG PHHPHGELAG ERGAAGLRYG GGDISLGHGH HGDGGHRHHH  60
QLGGDAERQQ DGSMDMLARH SSSPAGFFSN LMVDNGYPSS KAGGSGGAGA EAHHPSTASG  120
SGRKMKPSQL NFTRPQQGGH LSQISEDGAF PAGLAGDRAV HSGESSGCGA SARSFSGGFS  180
IVGPWEESRD IISTLGAYDS QYSGAMAGTA LEMAGMDRYM QLQQDQVPFK VRAKRGCATH  240
PRSIAERERR TRISEKLRKL QELVPNMDKQ TSTADMLDLA VEHIKGLQSE LQTLKHEQEK  300
CTCCRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-126EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.11e-146transcription factor bHLH128-like
SwissprotQ8H1024e-52BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1E5USQ60.0A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Ab02229.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]