PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026281.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bZIP
Protein Properties Length: 275aa    MW: 29880.6 Da    PI: 5.5319
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026281.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.3e-10126168850
                 HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                 r+   NReA r++R++Kka  + Lee+vk+L a N++L  +l+
  Do026281.1 126 RKPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLRRLQ 168
                 66677*********************************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-8114186IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-14117187No hitNo description
PROSITE profilePS502178.6121168IPR004827Basic-leucine zipper domain
PfamPF077164.7E-13121176IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-7125169No hitNo description
CDDcd146862.43E-12126177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLPRSTTEFS GEVCCPATCK FVSSAIHLFC LLISDQRRKI VPDTFSVTMD DGADLPYQLL  60
FSHPEMPDSF DEFLNSATTT CTHTHSCNPP GPSAPMHTHT CLHTHTQVFA GGAEDDDARE  120
DPAKPRKPLG NREAVRKYRE KKKAHAAFLE EEVKKLRAAN QQLLRRLQGH AALEAEVVRL  180
RSLLLDVRCK IDADVGAFPF QKPCSVGSVG CADPALCCNG NSEVAGAWEE SSVPSAADCR  240
IDEGGGLSRE IDVTEGLHHS MDVVASFVSS DSLAE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026281.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142351.11e-125uncharacterized protein LOC100274522
RefseqXP_020394445.11e-125putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394446.11e-125putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394447.11e-125putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394448.11e-125putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394449.11e-125putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ8GTS23e-52BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A1E5WK790.0A0A1E5WK79_9POAL; Uncharacterized protein
STRINGGRMZM2G175870_P011e-125(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38313675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.12e-23bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]