PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025951.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 367aa    MW: 39707.9 Da    PI: 7.2085
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025951.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.6e-1352108155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  s+n  ++k+   g ++ +e Aa+a++ a++k++g
  Do025951.1  52 SIYRGVTRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 108
                 57*******************8888888775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-1552118IPR016177DNA-binding domain
PfamPF008474.6E-952108IPR001471AP2/ERF domain
SMARTSM003802.3E-2053122IPR001471AP2/ERF domain
PROSITE profilePS5103218.91353116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1353117IPR001471AP2/ERF domain
PRINTSPR003674.2E-65465IPR001471AP2/ERF domain
PROSITE profilePS510328.729126182IPR001471AP2/ERF domain
SMARTSM003800.0038144188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-6156183IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-5157184IPR016177DNA-binding domain
PRINTSPR003674.2E-6164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAKPRKNSTA AANSSNNNAT SAAAAAGDVG VRVKPKRTRK SVPRESPSQR SSIYRGVTRH  60
RWTGRFEAHL WDKNSWNESQ NKKGKQGAYD DEEAAARAYD LAALKYWGPE TILNFPASVY  120
EDELKEMEGQ SREEYIGSLR RSMKFIHRKS SGFSRATQEE AAMAYDMAAI EYRGLNAVTN  180
FDLSRYLKWL RPGADGVAAA AQNPHPMLGA LAQHHQLLPP PADDATIDAA AFHHDHHQRQ  240
GLPPRTSLGH TPTTSALSLL LQSPKFKEMI ERTSAAESGG GGDTTTTSSS SPTPSPSPPR  300
ASPSPSPPTQ QQHQAGGAAS PQCSFPEDIQ TFFGCEDAGA VGVDVDALFF GDLAAYASPA  360
FHFELDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551111e-126BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankBT0396321e-126BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankKJ7275881e-126KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956862.11e-158PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN42e-57AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLK3ZU481e-158K3ZU48_SETIT; Uncharacterized protein
STRINGSi030129m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-53ARIA-interacting double AP2 domain protein