PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025696.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 280aa    MW: 29995.9 Da    PI: 7.4286
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025696.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.19.1e-312104198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q+++e 
  Do025696.1   2 SCNGCRVLRKGCSDKCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQAAVES 100
                 6*************************99********************************************************************998 PP

      DUF260  95 allk 98 
                 +l++
  Do025696.1 101 VLRG 104
                 8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4831107IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDKCAIR PCLQWIRSPD AQGNATVFLA KFYGRAGLIN LITAGPEHVR  60
PAIFRSLLYE ACGRMLNPVY GSVGLLWSGN WQLCQAAVES VLRGMPIAQP PAAATAVPPL  120
RTCDIRHVAR REDHGGAVAA GLHRIANSSR GQFKRSSAHR SSAGSDSGIE LVFSQPSAAM  180
LVDVRQAQPL NWAPCQPSHD AVPETDSDAS VDTVDVSHVS QSEPAEPPRE NDERADGLDL  240
TLGLPPTARK IEPSDIDDGQ PCHRGEPVKL GLAIADSRTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-145FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818644.11e-166LOB domain-containing protein 42-like
TrEMBLA0A1E5VTJ50.0A0A1E5VTJ5_9POAL; LOB domain-containing protein 41
STRINGGRMZM2G132693_P011e-158(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-65LOB domain-containing protein 41