PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025245.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 247aa    MW: 26791.9 Da    PI: 4.3296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025245.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-193182156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Do025245.1 31 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARNLRGA 82
                5799******.**********843...4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-283190No hitNo description
PfamPF008472.0E-113281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-293289IPR001471AP2/ERF domain
SMARTSM003808.9E-333295IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-213289IPR016177DNA-binding domain
PROSITE profilePS5103221.4963289IPR001471AP2/ERF domain
PRINTSPR003671.2E-83344IPR001471AP2/ERF domain
PRINTSPR003671.2E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDFSYFFSSS SEKKSSKRRQ QQQQQDNGNE TRYLGVRRRP WGRYAAEIRD PATKERHWLG  60
TFDTAEEAAI AYDRAARNLR GASARTNFAY PDLPPGSSVT PYLSPDLSAD QLQSFYADPV  120
PASHQPAPAC DQPASYGGAD NEAYQYQVPA EMSSYGAVDA SMVYGGNAGM DMYFDGGNGA  180
ASGGDRAWCD ASELDFGGYN DAAASASASH GMYFEEGYVH SPLFSPMPAA DEVDGFQLGG  240
SSSSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-173388662ATERF1
3gcc_A2e-173388662ATERF1
5wx9_A2e-1732881471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219KKSSKRRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278671e-118KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821358.11e-123ethylene-responsive transcription factor LEP-like
TrEMBLA0A1E5VG731e-179A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP
STRINGPavir.Ab01422.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-29ERF family protein