PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024444.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LFY
Protein Properties Length: 388aa    MW: 41827.6 Da    PI: 9.3107
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024444.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY535.22.4e-16313781386
     FLO_LFY   1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseif 97 
                 mdp++ fsa+  f+wd  +     pa +++    +++p  +  a    + rele+l+ +yGvr +tva+i+elGft+stL++m+++eldd+m++l+ +f
  Do024444.1   1 MDPNDaFSAAhPFRWDLGP-----PAPAAPAPPPPPPP--MPLAPPVSAPRELEDLVAGYGVRPSTVARISELGFTASTLLGMTERELDDMMAALAGLF 92 
                 777654876559****532.....22222222222333..33455566789************************************************ PP

     FLO_LFY  98 rldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskk..kqk 194
                 r+d+l+Ger+G++aa+raer r+++      r +     + ++lda+sqe+ls+e++     aa+sgg    ea+  +++ kk+ ++   a++k  k++
  Do024444.1  93 RWDVLLGERFGLRAALRAERGRVMSLG--GGRFH-----NGSTLDAASQEVLSDERD-----AAASGGVADDEAGRRMVTGKKQAKKGAAAARKgkKAR 179
                 ************************966..66663.....5779***********987.....4556655555555555554444444333333211222 PP

     FLO_LFY 195 rkkkkelkse......edede...eeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnq 284
                 rk++ +           ded    +e+++++  g+g +g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq+iak  G+k+Ptkvtnq
  Do024444.1 180 RKRELR--PLdvledeGDEDGgggSESTESSAGGGGGGGAERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRVFLLQVQSIAKLGGHKAPTKVTNQ 276
                 222222..11344433222221112333344444777888*********************************************************** PP

     FLO_LFY 285 vfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlers 383
                 vfryakk+gasyinkPkmrhYvhCYalhcLdeeasnalrra+k+rgenvGawrqacy+plv+iaar+g+didavf+ahprL+iWYvPt+LrqLCh++r 
  Do024444.1 277 VFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENVGAWRQACYAPLVEIAARHGFDIDAVFAAHPRLAIWYVPTRLRQLCHQARG 375
                 **************************************************************************************************9 PP

     FLO_LFY 384 kas 386
                 +++
  Do024444.1 376 SHA 378
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016985.2E-1901378IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDPNDAFSAA HPFRWDLGPP APAAPAPPPP PPPMPLAPPV SAPRELEDLV AGYGVRPSTV  60
ARISELGFTA STLLGMTERE LDDMMAALAG LFRWDVLLGE RFGLRAALRA ERGRVMSLGG  120
GRFHNGSTLD AASQEVLSDE RDAAASGGVA DDEAGRRMVT GKKQAKKGAA AARKGKKARR  180
KRELRPLDVL EDEGDEDGGG GSESTESSAG GGGGGGAERQ REHPFVVTEP GEVARAKKNG  240
LDYLFHLYEQ CRVFLLQVQS IAKLGGHKAP TKVTNQVFRY AKKCGASYIN KPKMRHYVHC  300
YALHCLDEEA SNALRRAYKA RGENVGAWRQ ACYAPLVEIA ARHGFDIDAV FAAHPRLAIW  360
YVPTRLRQLC HQARGSHAAA GLPPPPMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1002163762162PROTEIN LEAFY
2vy2_A1e-1002163762162PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1798820.0AY179882.1 Zea mays cultivar A632 floricaula/leafy-like 1 (fl1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976675.10.0probable transcription factor FL
SwissprotQ0JAI10.0FL_ORYSJ; Probable transcription factor FL
TrEMBLA0A1E5W6A30.0A0A1E5W6A3_9POAL; Putative transcription factor FL
STRINGSi011756m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82693649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.13e-98floral meristem identity control protein LEAFY (LFY)