PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023544.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 85aa    MW: 9180.74 Da    PI: 10.1252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023544.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.61.2e-102362141
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41
                lp GfrF+Ptdeel+ +yL++k+ + +l++  +i+++d+  
  Do023544.1 23 LPIGFRFRPTDEELLLHYLRRKALACPLPT-GIIPDADLAC 62
                799************************999.8899999864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-141064IPR003441NAC domain
PROSITE profilePS5100513.9612385IPR003441NAC domain
PfamPF023651.3E-62446IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MEGRSGGAWH MLQGPAGVPV AGLPIGFRFR PTDEELLLHY LRRKALACPL PTGIIPDADL  60
ACLPSLKNLA HEAAVERRGR RGVKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699702e-53EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971124.16e-27PREDICTED: NAC domain-containing protein 83-like isoform X3
RefseqXP_004971126.16e-27PREDICTED: NAC domain-containing protein 83-like isoform X2
TrEMBLC5XGY26e-25C5XGY2_SORBI; Putative uncharacterized protein Sb03g044440
TrEMBLK0DG983e-26K0DG98_MAIZE; NAC9 NAC type transcription factor (Fragment)
TrEMBLK7V6023e-26K7V602_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGSb03g044440.12e-24(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.19e-14NAC domain containing protein 47